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SampleInfo

List sample information and perform statistics

SeuratPreparing

Load, prepare and apply QC to data, using `Seurat`

ClusterMarkersOfAllCells

Markers for clusters of all cells.

TopExpressingGenesOfAllCells

Top expressing genes for clusters of all cells.

TOrBCellSelection

Separate T and non-T cells and select T cells; or separate B and non-B cells and select B cells.

SeuratMap2Ref

Map the seurat object to reference

ClusterMarkers

Markers for clusters of all or selected T/B cells.

TopExpressingGenes

Top expressing genes for clusters of all or selected T/B cells.

TESSA

Tessa is a Bayesian model to integrate T cell receptor (TCR) sequence profiling with transcriptomes of T cells.

SeuratClusterStats

Statistics of the clustering.

CellCellCommunicationPlots

Visualization for cell-cell communication inference.

ClonalStats

Visualize the clonal information.

ScFGSEA

Gene set enrichment analysis for cells in different groups using `fgsea`

MarkersFinder

Find markers between different groups of cells

CDR3AAPhyschem

CDR3 AA physicochemical feature analysis